Source: GWASCAT

Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Disease Score vda EI vda N. PMIDs First Ref. Last Ref.
dbSNP: rs514000
rs514000
PTPN2
1.000 0.040 18 12854073 intron variant C/T snv 0.71
CUI: C0010346
Disease: Crohn Disease
Crohn Disease 		0.710 1.000 1 2015 2015
dbSNP: rs559406
rs559406
PTPN2
1.000 0.040 18 12857003 intron variant G/T snv 0.44
CUI: C0033860
Disease: Psoriasis
Psoriasis 		0.700 1.000 1 2017 2017
dbSNP: rs2847297
rs2847297
PTPN2
0.827 0.200 18 12797695 intron variant A/G snv 0.40
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.800 1.000 2 2012 2015
dbSNP: rs56150366
rs56150366
PTPN2
18 12844051 intron variant T/C snv 0.40
CUI: C0201657
Disease: C-reactive protein measurement
C-reactive protein measurement 		0.700 1.000 1 2018 2018
dbSNP: rs2847273
rs2847273
PTPN2
18 12856909 intron variant A/C snv 0.34
CUI: C0200638
Disease: Eosinophil count procedure
Eosinophil count procedure 		0.700 1.000 1 2019 2019
dbSNP: rs2852151
rs2852151
PTPN2
18 12841177 intron variant G/A snv 0.32
CUI: C0201657
Disease: C-reactive protein measurement
C-reactive protein measurement 		0.700 1.000 1 2018 2018
dbSNP: rs2847281
rs2847281
PTPN2
1.000 0.040 18 12821594 intron variant A/G snv 0.32
CUI: C0014859
Disease: Esophageal Neoplasms
Esophageal Neoplasms 		0.800 1.000 1 2012 2012
dbSNP: rs2847281
rs2847281
PTPN2
1.000 0.040 18 12821594 intron variant A/G snv 0.32
CUI: C0007137
Disease: Squamous cell carcinoma
Squamous cell carcinoma 		0.700 1.000 1 2012 2012
dbSNP: rs2847281
rs2847281
PTPN2
1.000 0.040 18 12821594 intron variant A/G snv 0.32
CUI: C0201657
Disease: C-reactive protein measurement
C-reactive protein measurement 		0.800 1.000 1 2011 2011
dbSNP: rs8083786
rs8083786
PTPN2
1.000 0.120 18 12881362 intron variant A/G snv 0.27
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.800 1.000 2 2014 2019
dbSNP: rs12961799
rs12961799
PTPN2
18 12904400 intron variant T/C snv 0.23
CUI: C1305855
Disease: Body mass index
Body mass index 		0.700 1.000 1 2018 2018
dbSNP: rs11875687
rs11875687
PTPN2
1.000 0.080 18 12843138 intron variant T/C snv 0.17
CUI: C0007570
Disease: Celiac Disease
Celiac Disease 		0.800 1.000 1 2011 2012
dbSNP: rs1893217
rs1893217
PTPN2
0.742 0.440 18 12809341 intron variant A/G snv 0.12
CUI: C0010346
Disease: Crohn Disease
Crohn Disease 		0.850 1.000 2 2008 2016
dbSNP: rs1893217
rs1893217
PTPN2
0.742 0.440 18 12809341 intron variant A/G snv 0.12
CUI: C0004364
Disease: Autoimmune Diseases
Autoimmune Diseases 		0.810 1.000 2 2011 2019
dbSNP: rs1893217
rs1893217
PTPN2
0.742 0.440 18 12809341 intron variant A/G snv 0.12
CUI: C0011854
Disease: Diabetes Mellitus, Insulin-Dependent
Diabetes Mellitus, Insulin-Dependent 		0.830 0.667 2 2009 2019
dbSNP: rs1893217
rs1893217
PTPN2
0.742 0.440 18 12809341 intron variant A/G snv 0.12
CUI: C0021390
Disease: Inflammatory Bowel Diseases
Inflammatory Bowel Diseases 		0.810 1.000 2 2012 2016
dbSNP: rs1893217
rs1893217
PTPN2
0.742 0.440 18 12809341 intron variant A/G snv 0.12
CUI: C4310768
Disease: AUTOIMMUNE DISEASE, MULTISYSTEM, INFANTILE-ONSET, 2
AUTOIMMUNE DISEASE, MULTISYSTEM, INFANTILE-ONSET, 2 		0.700 1.000 1 2019 2019
dbSNP: rs1893217
rs1893217
PTPN2
0.742 0.440 18 12809341 intron variant A/G snv 0.12
CUI: C0009324
Disease: Ulcerative Colitis
Ulcerative Colitis 		0.720 1.000 1 2014 2016
dbSNP: rs1893217
rs1893217
PTPN2
0.742 0.440 18 12809341 intron variant A/G snv 0.12
CUI: C0007570
Disease: Celiac Disease
Celiac Disease 		0.800 1.000 1 2010 2010
dbSNP: rs1893217
rs1893217
PTPN2
0.742 0.440 18 12809341 intron variant A/G snv 0.12
CUI: C4014795
Disease: AUTOIMMUNE DISEASE, MULTISYSTEM, INFANTILE-ONSET, 1
AUTOIMMUNE DISEASE, MULTISYSTEM, INFANTILE-ONSET, 1 		0.700 1.000 1 2019 2019
dbSNP: rs1893217
rs1893217
PTPN2
0.742 0.440 18 12809341 intron variant A/G snv 0.12
CUI: C0021053
Disease: Immune System Diseases
Immune System Diseases 		0.800 1.000 1 2011 2011
dbSNP: rs1893217
rs1893217
PTPN2
0.742 0.440 18 12809341 intron variant A/G snv 0.12
CUI: C3150797
Disease: AUTOIMMUNE DISEASE, SUSCEPTIBILITY TO, 6
AUTOIMMUNE DISEASE, SUSCEPTIBILITY TO, 6 		0.700 1.000 1 2019 2019
dbSNP: rs12968719
rs12968719
PTPN2
0.827 0.120 18 12879467 intron variant G/A snv 8.5E-02
CUI: C0010346
Disease: Crohn Disease
Crohn Disease 		0.700 1.000 1 2016 2016
dbSNP: rs12968719
rs12968719
PTPN2
0.827 0.120 18 12879467 intron variant G/A snv 8.5E-02
CUI: C0008313
Disease: Cholangitis, Sclerosing
Cholangitis, Sclerosing 		0.700 1.000 1 2016 2016
dbSNP: rs12968719
rs12968719
PTPN2
0.827 0.120 18 12879467 intron variant G/A snv 8.5E-02
CUI: C0009324
Disease: Ulcerative Colitis
Ulcerative Colitis 		0.700 1.000 1 2016 2016